Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015929953.1_cds_XP_016477133.1_68897
CDS Infomation

[gene=LOC107798629] [db_xref=GeneID:107798629] [protein=pre-mRNA-processing factor 39-like] [protein_id=XP_016477133.1] [location=join(15617..16043,16537..16640,17730..17959,18584..18751,19056..19401,19871..20014,21195..21347,21441..21557,22152..22232,22335..22484,23732..24028,24601..24903)] [gbkey=CDS]
Sequence

ATGGGCGATAGTGAAACTGCGGTAGCTCAAACCTCGTCAGTCACTGACTATAAATCTGCT
GGTTATTCGTCAAAAGTTCCTGATGATGCTGGCACCCATACTTCTTCCGATGCTGGAAAT
GCTGGGGATTTGGCCACTCCATGTCCAAATGGCGCTGGGGAGTTAGCATCTTCTAATGTA
GAAGCTGGAAACCTATATACTGCTGATGCAGTGTCTACCCAGCAAGAAGGTGCTACTGCT
ATGACATATGAGGCCAGCCAGGATCTTGCAGCTCTAGAAGATGCAGCTGCAGGTTCATCC
CAAGCGGCTGTTTATGACTCTTCTGCAAATGGCAACAGCACTATTGAAGCAAGAGACATT
GCTGAAAATGGGATTGCATCAGATGTCCATGGAAATTCCAATATGCATCAGCCAGAAGAT
GGCTTAGCTTTATCTCCTGAAGAGGAAAGATTATGGAGCATAGTAAGGACAAATTCTTTA
GACTTCAATGCCTGGACTTCCCTTATTGAGGAGACAGAGAAGATGTCAGAGGGCAACATT
TTGAAGATTCGGAAGGTTTATGATGCATTCTTGGCAGAATTTCCTCTATGTTACGGTTAT
TGGAAGAAATATGCAGATCATGAGGCACGTCTTGGTTCTGTCGACAAAGTTGTGGAGGTC
TATGAACGAGCTGTTCAAGGCGTGACATATTCGGTAGATATGTGGTTGCACTATTGTGTT
TTTGCTATAAGCACTTATGGAGATCCTGACACCATTAGAAGGTTATTTGAAAGAGGATTA
GTGTATGTTGGAACAGACTACCTGTCTTTTCCACTTTGGGATAAGTACCTGGAGTACGAG
TACACACAGCAGGCCTGGTCAAATGTTGCTGCCATATACACTCAGATATTGCAGAATCCA
AATCAGCAGCTCGATCGCTATTTTGAAGGTTTTAAGGAGCTGGTGGCTAGTAGGCCTATA
TCAGAGCTACGAACTCCTGAAGAAGCTGCAGCTGCAGCAGAAGCTGGCAGTGAACAGATT
GAGGGAGAGGTTAATCCTAGTTCTGAGCCTTCTAAACCTGTAAGTGCAATCTTAAAAGAT
GCCGAGGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAG
TTCGATTCTAAGATCATTGATTTTGAAACTGCTATAAGGAGGCCATACTTTCATGTGCGG
CCTCTTAATGTTGCGGAGCTTGAAAATTGGAACAGTTATCTTGATTTCATAGAAGGAGGA
GATGACTTCAATAAGGTGGTCAAGCTGTATGAGAGATGTCTGATTGCTTGTGCCAATTAT
CCTGAATTTTGGATTCGGTATGTTTCGTGTATGGAAACAAGTGGAAGTTTGGATCTTGCC
GATAATGCCCTTGCTCGTGCCACTCAAGTCTTTGTCAAGAGACAGCCAGAGATTCACCTT
TTTGCTGCTCGATTGCGGGAGCAACGTGGTGATATACCTGGTGCTCAGGCTGCGTATCAA
CTTGTGCACGCTGAAATATCACCTGGACTTGTAGAAGCAATAATCAAGCATGCGAACATG
GAACGTCGACTTGGGAATCTTGAGGATGCCTGTTCAGTATACGAACAAGCTATCGCCATT
GAAAAAGGAAAGGAGCACTCGCAGAGTCTGCCATTATTGCTTGCACAGTACTCTCGGTTT
TTGTACTTGGTTTCTGGGAAGGTGGGAAAAGCTCGGGAAATTCTTGATCAAGCAGTTGAG
AATGTCCAGTTGTCAAAACCACTTCTGGAGGCAGTGATCCATTTAGAATCCATTCAGTCG
CTACCAAAGAGAATAGATTTGCTGGATTCATTGGTTGATAAGTTCATAGTTCCATCCCCT
GAGAACCCTAGCGTTGCAAGTGTTGATGAAAGAGAGGAGTTATCAAGCATTTTCTTGGAG
TTTCTAGATCTTTTTGGAGATGCAGCATCAATTAAGAAGGCTGATGATCGGCATGCTAAG
CTCTTCTTACGCCATAGAACCTCTTCAGATTCAAAGAAACGTCAGGCTGACGATTATTTA
GTTTCTGAGAAGACAAAGCTGGCAAAGTCTGCTGTTGCAGCATCTAACCCCTCAGTGGCT
GGTGCATTTCCTGGAGCGCAAAATCAATGGCCTGCAGGTTATGGTGTACAAGGTCAAACC
TGGCCACAGGCTGCACAAGCCCCACCACAGCAGTGGAATCCTGGTTATGCACAACAGGCA
GCATATGGTGCTTACAGCAGTTACGGAGCCAGCTATGCACCTCCTCAAGGGCCTGCACCA
GTGCCCTCAAGTGCTGGTTATGGTGCTTATCCTTCAACATACCCGGCGCAGGTAAGTGGA
GCGCCTTTTATATATCAGCATTTTCATTGCTTGTCTAGCATACATTACCAACTTGCATTA
TGGTTTCAGCAGGGATACTTTATTAACCAGTTCTATAGTTTTCATGGTTACCTTTTTTTG
GGTAAAAAATTGTTTTCATGTCCTTGTATGCTAAGAATGGTTGGTGAGATTAAAATTTGA

Peptide Sequence

PEP ID

XP_016477133.1
PEP Infomation

PREDICTED: pre-mRNA-processing factor 39-like [Nicotiana tabacum]
Sequence

MGDSETAVAQTSSVTDYKSAGYSSKVPDDAGTHTSSDAGNAGDLATPCPNGAGELASSNV
EAGNLYTADAVSTQQEGATAMTYEASQDLAALEDAAAGSSQAAVYDSSANGNSTIEARDI
AENGIASDVHGNSNMHQPEDGLALSPEEERLWSIVRTNSLDFNAWTSLIEETEKMSEGNI
LKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSVDKVVEVYERAVQGVTYSVDMWLHYCV
FAISTYGDPDTIRRLFERGLVYVGTDYLSFPLWDKYLEYEYTQQAWSNVAAIYTQILQNP
NQQLDRYFEGFKELVASRPISELRTPEEAAAAAEAGSEQIEGEVNPSSEPSKPVSAILKD
AEELEKYIAIREEMYKKAKEFDSKIIDFETAIRRPYFHVRPLNVAELENWNSYLDFIEGG
DDFNKVVKLYERCLIACANYPEFWIRYVSCMETSGSLDLADNALARATQVFVKRQPEIHL
FAARLREQRGDIPGAQAAYQLVHAEISPGLVEAIIKHANMERRLGNLEDACSVYEQAIAI
EKGKEHSQSLPLLLAQYSRFLYLVSGKVGKAREILDQAVENVQLSKPLLEAVIHLESIQS
LPKRIDLLDSLVDKFIVPSPENPSVASVDEREELSSIFLEFLDLFGDAASIKKADDRHAK
LFLRHRTSSDSKKRQADDYLVSEKTKLAKSAVAASNPSVAGAFPGAQNQWPAGYGVQGQT
WPQAAQAPPQQWNPGYAQQAAYGAYSSYGASYAPPQGPAPVPSSAGYGAYPSTYPAQVSG
APFIYQHFHCLSSIHYQLALWFQQGYFINQFYSFHGYLFLGKKLFSCPCMLRMVGEIKI

Transcript Sequence

Gene sequence data has not been registered.